在我们查阅文献或做分析时经常会看见除A/G/C/T以外的符号用来代表一类碱基,现在将DNA、RNA水平下的标准命名总结如下:
DNA水平
符号 | 含义 | 描述 |
---|---|---|
A | A | Adenine, 腺嘌呤 |
C | C | Cytosine, 胞嘧啶 |
G | G | Guanine, 鸟嘌呤 |
T | T | Thymine, 胸腺嘧啶 |
B | C/ G / T | not-A (B follows A in alphabet) |
D | A / G / T | not-C (D follows C in alphabet) |
H | A / C / T | not-G (H follows G in alphabet) |
K | G / T | Keto, 酮类 |
M | A / C | aMino, 胺基 |
N | A / C / G / T | aNy,任意的 |
R | A / G | puRine,嘌呤类 |
S | G / C | Strong interaction (3 H-bonds) |
V | A / C / G | not-T / not-U ( V follows U ) |
W | A / T | Weak interaction (2 H-bonds) |
Y | C / T | pYrimidine, 嘧啶 |
X* | A / C / G / T | masked nucleotide |
-* | none | gap of indeterminate length |
RNA水平
符号 | 含义 | 描述 |
---|---|---|
a | A | Adenosine, 腺甘酸 |
c | C | Cytidine, 胞嘧啶核苷 |
g | G | Guanosine, 鸟嘌呤核苷 |
u | U | Uridine, 尿嘧啶核苷 |
b | c / g / u | not-a (b follows a in alphabet) |
d | a / g / u | not-c (d follows c in alphabet) |
h | a / c / u | not-g (h follows g in alphabet) |
k | g / u | keto, 酮类 |
m | a / c | amino, 胺基 |
n | a / c / g / u | any,任意 |
r | a / g | purine, 嘌呤 |
s | g / c | strong interaction (3 H-bonds) |
v | a / c / g | not-u ( v follows u |
w | a / u | weak interaction (2 H-bonds) |
y | c / u | pyrimidine |
参考资料:
1.http://varnomen.hgvs.org/bg-material/standards/