OrgDB时我们常用的注释的包,目前在Bioconductor 上有20个常用的 OrgDB 注释包。非模式生物的参考之前的一篇文章进行构建《非模式基因GO富集分析》。

包名创建者介绍排名
org.Hs.eg.dbBioconductor Package MaintainerGenome wide annotation for Human3
org.Mm.eg.dbBioconductor Package MaintainerGenome wide annotation for Mouse5
org.Rn.eg.dbBioconductor Package MaintainerGenome wide annotation for Rat15
org.Dm.eg.dbBioconductor Package MaintainerGenome wide annotation for Fly27
org.At.tair.dbBioconductor Package MaintainerGenome wide annotation for Arabidopsis29
org.Sc.sgd.dbBioconductor Package MaintainerGenome wide annotation for Yeast31
org.Dr.eg.dbBioconductor Package MaintainerGenome wide annotation for Zebrafish35
org.Ce.eg.dbBioconductor Package MaintainerGenome wide annotation for Worm52
org.Bt.eg.dbBioconductor Package MaintainerGenome wide annotation for Bovine61
org.Mmu.eg.dbBioconductor Package MaintainerGenome wide annotation for Rhesus65
org.Ss.eg.dbBioconductor Package MaintainerGenome wide annotation for Pig66
org.Gg.eg.dbBioconductor Package MaintainerGenome wide annotation for Chicken69
org.Cf.eg.dbBioconductor Package MaintainerGenome wide annotation for Canine74
org.EcK12.eg.dbBioconductor Package MaintainerGenome wide annotation for E coli strain K1278
org.Xl.eg.dbBioconductor Package MaintainerGenome wide annotation for Xenopus114
org.Pt.eg.dbBioconductor Package MaintainerGenome wide annotation for Chimp120
org.Ag.eg.dbBioconductor Package MaintainerGenome wide annotation for Anopheles123
org.Pf.plasmo.dbBioconductor Package MaintainerGenome wide annotation for Malaria128
org.EcSakai.eg.dbBioconductor Package MaintainerGenome wide annotation for E coli strain Sakai137
org.Mxanthus.dbEduardo Illueca FernándezGenome wide annotation for Myxococcus xanthus DK 1622472

参考资料:

1.http://www.bioconductor.org/packages/devel/BiocViews.html#___OrgDb