OrgDB时我们常用的注释的包,目前在Bioconductor 上有20个常用的 OrgDB 注释包。非模式生物的参考之前的一篇文章进行构建《非模式基因GO富集分析》。
包名 | 创建者 | 介绍 | 排名 |
---|---|---|---|
org.Hs.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Human | 3 |
org.Mm.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Mouse | 5 |
org.Rn.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Rat | 15 |
org.Dm.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Fly | 27 |
org.At.tair.db | Bioconductor Package Maintainer | Genome wide annotation for Arabidopsis | 29 |
org.Sc.sgd.db | Bioconductor Package Maintainer | Genome wide annotation for Yeast | 31 |
org.Dr.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Zebrafish | 35 |
org.Ce.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Worm | 52 |
org.Bt.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Bovine | 61 |
org.Mmu.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Rhesus | 65 |
org.Ss.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Pig | 66 |
org.Gg.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Chicken | 69 |
org.Cf.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Canine | 74 |
org.EcK12.eg.db | Bioconductor Package Maintainer | Genome wide annotation for E coli strain K12 | 78 |
org.Xl.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Xenopus | 114 |
org.Pt.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Chimp | 120 |
org.Ag.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Anopheles | 123 |
org.Pf.plasmo.db | Bioconductor Package Maintainer | Genome wide annotation for Malaria | 128 |
org.EcSakai.eg.db | Bioconductor Package Maintainer | Genome wide annotation for E coli strain Sakai | 137 |
org.Mxanthus.db | Eduardo Illueca Fernández | Genome wide annotation for Myxococcus xanthus DK 1622 | 472 |
参考资料:
1.http://www.bioconductor.org/packages/devel/BiocViews.html#___OrgDb