BioWDL上面整理了很多测序相关的WDL流程，前面在WDL(Workflow Description Language)搭建pipeline利器介绍了WDL基本语法，以及WDL的便利性，本文对BioWDL汇总的pipeline以简单的整理分享给大家。
| 名称 | 类型 | 描述 |
|---|---|---|
| BamMetrics (repo) | Single-Sample | A BioWDL workflow for gathering metrics from a BAM file. |
| expression-quantification (repo) | Multi-Sample | A BioWDL workflow for quantifying expression. |
| gatk-CNVcalling (repo) | Multi-Sample | The BioWDL implemention of the GATK CNV calling workflow. |
| gatk-preprocess (repo) | Single-Sample | A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. |
| gatk-variantcalling (repo) | Multi-Sample | A pipeline that calls variants on a group of BAM files. |
| germline-DNA (repo) | Multi-Sample | A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. |
| QC (repo) | Single-Sample | A BioWDL workflow for gathering QC metrics on and prepocessing FASTQ files. |
| RNA-seq (repo) | Multi-Sample | A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. |
| small-rna (repo) | Multi-Sample | Small rna pipeline. |
| somatic-variantcalling (repo) | Single-Sample | A pipeline for somatic variantcalling. |
| structural-variantcalling (repo) | Single-Sample | A workflow for calling structural variants. |
| TALON-WDL (repo) | Multi-Sample InDevelopment | WDL implementation of the TALON workflow. |
| tasks (repo) | Other | A collection of reusable WDL tasks. |
总体来说，对于生信工作者来说这种workflow的形式是很方便快速搭建分析流程的，BioWDL的流程是很好的学习素材，建议学习和参考。
参考资料：
1.https://biowdl.github.io/
